SkInnervation3D

SkInnervation3D is a desktop application that provides a graphical interface for defining and running image-analysis workflows — no coding required.

Typical workflows are typically built in two main stages:

• Pre-processing — whole-sample processing: conversion to OME-Zarr, flatfield correction, illumination correction, stitching, and more
• Analysis — skin innervation analysis: fiber segmentation, counting, surface fitting, plexus analysis, and more

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Overview

The application lets you:

1. Set an analysis directory — all outputs and logs will be written here
2. Build a workflow by selecting and ordering tasks in the left panel
3. Configure task parameters for each step
4. Select the image to process from the OME-Zarr dataset
5. Run the workflow and monitor progress

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More Information

Please refer to the other section of the documentation to have more information on how to use and install the application:

• Usage
• Installation

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